HL_9NKL_009

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9NKL|1|R1|G|329, 9NKL|1|R1|A|330, 9NKL|1|R1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_009 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1106

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9NKL|1|R1|G|327
9NKL|1|R1|U|328
9NKL|1|R1|G|329
9NKL|1|R1|A|330
9NKL|1|R1|C|331
9NKL|1|R1|A|332
9NKL|1|R1|G|333
9NKL|1|R1|C|334
9NKL|1|R1|C|335

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4