HL_9NKL_011

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9NKL|1|R1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_011 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.2028

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NKL|1|R1|G|410
9NKL|1|R1|G|411
9NKL|1|R1|A|412
9NKL|1|R1|C|413
9NKL|1|R1|C|414
9NKL|1|R1|A|415
9NKL|1|R1|U|416
9NKL|1|R1|C|417

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15