HL_9NKL_014

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9NKL|1|R1|A|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_014 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3818

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9NKL|1|R1|C|544
9NKL|1|R1|U|545
9NKL|1|R1|U|546
9NKL|1|R1|A|547
9NKL|1|R1|G|548
9NKL|1|R1|G|549

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 21

Large ribosomal subunit protein bL21