HL_9NKL_042

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_042 not in the Motif Atlas

Homologous match to HL_9DFE_042

Geometric discrepancy: 0.1042

The information below is about HL_9DFE_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9NKL|1|R1|C|1752
9NKL|1|R1|G|1753
9NKL|1|R1|A|1754
9NKL|1|R1|A|1755
9NKL|1|R1|G|1756

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L19