HL_9NKL_050

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9NKL|1|R1|A|2211, 9NKL|1|R1|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_050 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.5444

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9NKL|1|R1|G|2209
9NKL|1|R1|U|2210
9NKL|1|R1|A|2211
9NKL|1|R1|A|2212
9NKL|1|R1|U|2213
9NKL|1|R1|C|2214
9NKL|1|R1|C|2215

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2