HL_9NKL_052

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9NKL|1|R1|A|2268, 9NKL|1|R1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0893

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9NKL|1|R1|C|2264
9NKL|1|R1|U|2265
9NKL|1|R1|A|2266
9NKL|1|R1|A|2267
9NKL|1|R1|A|2268
9NKL|1|R1|G|2269
9NKL|1|R1|A|2270
9NKL|1|R1|G|2271
9NKL|1|R1|U|2272
9NKL|1|R1|A|2273
9NKL|1|R1|A|2274
9NKL|1|R1|C|2275
9NKL|1|R1|G|2276

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

Large ribosomal subunit protein bL27