HL_9NKL_053

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_053 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2448

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9NKL|1|R1|G|2304
9NKL|1|R1|U|2305
9NKL|1|R1|C|2306
9NKL|1|R1|G|2307
9NKL|1|R1|G|2308
9NKL|1|R1|A|2309
9NKL|1|R1|C|2310
9NKL|1|R1|A|2311
9NKL|1|R1|U|2312

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L5