HL_9NKL_059

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9NKL|1|R1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_059 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1202

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9NKL|1|R1|U|2528
9NKL|1|R1|G|2529
9NKL|1|R1|A|2530
9NKL|1|R1|A|2531
9NKL|1|R1|G|2532
9NKL|1|R1|U|2533
9NKL|1|R1|A|2534
9NKL|1|R1|G|2535

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6