HL_9NKL_094

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9NKL|1|R3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1326

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9NKL|1|R3|G|1089
9NKL|1|R3|U|1090
9NKL|1|R3|U|1091
9NKL|1|R3|A|1092
9NKL|1|R3|A|1093
9NKL|1|R3|G|1094
9NKL|1|R3|U|1095
9NKL|1|R3|C|1096

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sg

30S ribosomal protein S7

Chain su

Small ribosomal subunit protein bS21