HL_9NL5_043

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9NL5|1|R1|A|1780, 9NL5|1|R1|U|1781, 9NL5|1|R1|U|1782, 9NL5|1|R1|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL5_043 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0771

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9NL5|1|R1|U|1777
9NL5|1|R1|U|1778
9NL5|1|R1|U|1779
9NL5|1|R1|A|1780
9NL5|1|R1|U|1781
9NL5|1|R1|U|1782
9NL5|1|R1|A|1783
9NL5|1|R1|A|1784
9NL5|1|R1|A|1785
9NL5|1|R1|A|1786
9NL5|1|R1|A|1787

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34