HL_9NL5_094

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9NL5|1|R3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL5_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0786

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9NL5|1|R3|G|1089
9NL5|1|R3|U|1090
9NL5|1|R3|U|1091
9NL5|1|R3|A|1092
9NL5|1|R3|A|1093
9NL5|1|R3|G|1094
9NL5|1|R3|U|1095
9NL5|1|R3|C|1096

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sg

30S ribosomal protein S7

Chain su

Small ribosomal subunit protein bS21