HL_9NL6_027

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

9NL6|1|R1|U|1094, 9NL6|1|R1|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_027 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.4507

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

9NL6|1|R1|C|1092
9NL6|1|R1|G|1093
9NL6|1|R1|U|1094
9NL6|1|R1|A|1095
9NL6|1|R1|A|1096
9NL6|1|R1|U|1097
9NL6|1|R1|A|1098
9NL6|1|R1|G|1099

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6