HL_9NL6_030

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_030 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1294

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9NL6|1|R1|G|1281
9NL6|1|R1|U|1282
9NL6|1|R1|G|1283
9NL6|1|R1|A|1284
9NL6|1|R1|A|1285
9NL6|1|R1|A|1286
9NL6|1|R1|A|1287
9NL6|1|R1|G|1288
9NL6|1|R1|C|1289

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32