HL_9NL6_064

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9NL6|1|R1|G|2751, 9NL6|1|R1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0805

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9NL6|1|R1|C|2745
9NL6|1|R1|U|2746
9NL6|1|R1|G|2747
9NL6|1|R1|A|2748
9NL6|1|R1|A|2749
9NL6|1|R1|A|2750
9NL6|1|R1|G|2751
9NL6|1|R1|C|2752
9NL6|1|R1|A|2753
9NL6|1|R1|U|2754
9NL6|1|R1|C|2755
9NL6|1|R1|U|2756
9NL6|1|R1|A|2757
9NL6|1|R1|A|2758
9NL6|1|R1|G|2759

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6