HL_9NL6_077

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL6_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1011

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NL6|1|R3|A|320
9NL6|1|R3|A|321
9NL6|1|R3|C|322
9NL6|1|R3|U|323
9NL6|1|R3|G|324
9NL6|1|R3|A|325
9NL6|1|R3|G|326
9NL6|1|R3|A|327
9NL6|1|R3|C|328
9NL6|1|R3|A|329
9NL6|1|R3|C|330
9NL6|1|R3|G|331
9NL6|1|R3|G|332
9NL6|1|R3|U|333

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20