HL_9NL7_025

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

9NL7|1|R1|U|958, 9NL7|1|R1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL7_025 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.2068

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra cWH

Broad Annotation

GNRA with extra cWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NL7|1|R1|G|954
9NL7|1|R1|U|955
9NL7|1|R1|G|956
9NL7|1|R1|C|957
9NL7|1|R1|U|958
9NL7|1|R1|A|959
9NL7|1|R1|A|960
9NL7|1|R1|C|961
9NL7|1|R1|G|962
9NL7|1|R1|U|963

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain R2

5S ribosomal RNA; 5S rRNA