HL_9NL7_045

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

9NL7|1|R1|C|1870, 9NL7|1|R1|A|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL7_045 not in the Motif Atlas

Geometric match to HL_6N5P_002

Geometric discrepancy: 0.3008

The information below is about HL_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57875.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

9NL7|1|R1|C|1868
9NL7|1|R1|G|1869
9NL7|1|R1|C|1870
9NL7|1|R1|A|1871
9NL7|1|R1|A|1872
9NL7|1|R1|G|1873

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1