HL_9NL7_077

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NL7_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1167

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NL7|1|R3|A|320
9NL7|1|R3|A|321
9NL7|1|R3|C|322
9NL7|1|R3|U|323
9NL7|1|R3|G|324
9NL7|1|R3|A|325
9NL7|1|R3|G|326
9NL7|1|R3|A|327
9NL7|1|R3|C|328
9NL7|1|R3|A|329
9NL7|1|R3|C|330
9NL7|1|R3|G|331
9NL7|1|R3|G|332
9NL7|1|R3|U|333

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20