3D structure

PDB id
9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
9NL7|1|R3|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NL7_086 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.1137
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

9NL7|1|R3|G|786
9NL7|1|R3|A|787
9NL7|1|R3|U|788
9NL7|1|R3|U|789
9NL7|1|R3|A|790
9NL7|1|R3|G|791
9NL7|1|R3|A|792
9NL7|1|R3|U|793
9NL7|1|R3|A|794
9NL7|1|R3|C|795
9NL7|1|R3|C|796

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain M
mRNA
Chain R1
Large subunit ribosomal RNA; LSU rRNA
Chain T
Transfer RNA; tRNA
Chain sk
Small ribosomal subunit protein uS11
Chain su
Small ribosomal subunit protein bS21

Coloring options:


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