HL_9NLB_052

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9NLB|1|R1|A|2268, 9NLB|1|R1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLB_052 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0772

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9NLB|1|R1|C|2264
9NLB|1|R1|U|2265
9NLB|1|R1|A|2266
9NLB|1|R1|A|2267
9NLB|1|R1|A|2268
9NLB|1|R1|G|2269
9NLB|1|R1|A|2270
9NLB|1|R1|G|2271
9NLB|1|R1|U|2272
9NLB|1|R1|A|2273
9NLB|1|R1|A|2274
9NLB|1|R1|C|2275
9NLB|1|R1|G|2276

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

Large ribosomal subunit protein bL27