HL_9NLB_057

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9NLB|1|R1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLB_057 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0906

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9NLB|1|R1|U|2404
9NLB|1|R1|G|2405
9NLB|1|R1|A|2406
9NLB|1|R1|A|2407
9NLB|1|R1|U|2408
9NLB|1|R1|G|2409
9NLB|1|R1|G|2410
9NLB|1|R1|A|2411
9NLB|1|R1|A|2412
9NLB|1|R1|G|2413

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15