HL_9NLB_064

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9NLB|1|R1|G|2751, 9NLB|1|R1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLB_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1001

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9NLB|1|R1|C|2745
9NLB|1|R1|U|2746
9NLB|1|R1|G|2747
9NLB|1|R1|A|2748
9NLB|1|R1|A|2749
9NLB|1|R1|A|2750
9NLB|1|R1|G|2751
9NLB|1|R1|C|2752
9NLB|1|R1|A|2753
9NLB|1|R1|U|2754
9NLB|1|R1|C|2755
9NLB|1|R1|U|2756
9NLB|1|R1|A|2757
9NLB|1|R1|A|2758
9NLB|1|R1|G|2759

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6