HL_9NLE_024

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

9NLE|1|R1|U|958, 9NLE|1|R1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLE_024 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.2033

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra cWH

Broad Annotation

GNRA with extra cWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NLE|1|R1|G|954
9NLE|1|R1|U|955
9NLE|1|R1|G|956
9NLE|1|R1|C|957
9NLE|1|R1|U|958
9NLE|1|R1|A|959
9NLE|1|R1|A|960
9NLE|1|R1|C|961
9NLE|1|R1|G|962
9NLE|1|R1|U|963

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain R2

5S ribosomal RNA; 5S rRNA