HL_9NLE_075

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9NLE|1|R3|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLE_075 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.2439

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NLE|1|R3|G|259
9NLE|1|R3|G|260
9NLE|1|R3|U|261
9NLE|1|R3|A|262
9NLE|1|R3|A|263
9NLE|1|R3|C|264
9NLE|1|R3|G|265
9NLE|1|R3|G|266
9NLE|1|R3|C|267

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sq

Small ribosomal subunit protein uS17

Chain st

30S ribosomal protein S20