HL_9NLE_099

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9NLE|1|R3|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLE_099 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1248

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9NLE|1|R3|G|1356
9NLE|1|R3|A|1357
9NLE|1|R3|U|1358
9NLE|1|R3|C|1359
9NLE|1|R3|A|1360
9NLE|1|R3|G|1361
9NLE|1|R3|A|1362
9NLE|1|R3|A|1363
9NLE|1|R3|U|1364
9NLE|1|R3|G|1365
9NLE|1|R3|C|1366

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14