HL_9NLF_012

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9NLF|1|R1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.117

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9NLF|1|R1|G|410
9NLF|1|R1|G|411
9NLF|1|R1|A|412
9NLF|1|R1|C|413
9NLF|1|R1|C|414
9NLF|1|R1|A|415
9NLF|1|R1|U|416
9NLF|1|R1|C|417

Current chains

Chain R1

23S ribosomal RNA

Nearby chains