HL_9NLF_025

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

9NLF|1|R1|U|958, 9NLF|1|R1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_025 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.198

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra cWH

Broad Annotation

GNRA with extra cWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NLF|1|R1|G|954
9NLF|1|R1|U|955
9NLF|1|R1|G|956
9NLF|1|R1|C|957
9NLF|1|R1|U|958
9NLF|1|R1|A|959
9NLF|1|R1|A|960
9NLF|1|R1|C|961
9NLF|1|R1|G|962
9NLF|1|R1|U|963

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain R2

5S ribosomal RNA; 5S rRNA