HL_9NLF_058

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9NLF|1|R1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLF_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0912

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9NLF|1|R1|U|2404
9NLF|1|R1|G|2405
9NLF|1|R1|A|2406
9NLF|1|R1|A|2407
9NLF|1|R1|U|2408
9NLF|1|R1|G|2409
9NLF|1|R1|G|2410
9NLF|1|R1|A|2411
9NLF|1|R1|A|2412
9NLF|1|R1|G|2413

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15