HL_9NLH_043

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9NLH|1|R1|A|1780, 9NLH|1|R1|U|1781, 9NLH|1|R1|U|1782, 9NLH|1|R1|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLH_043 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0896

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9NLH|1|R1|U|1777
9NLH|1|R1|U|1778
9NLH|1|R1|U|1779
9NLH|1|R1|A|1780
9NLH|1|R1|U|1781
9NLH|1|R1|U|1782
9NLH|1|R1|A|1783
9NLH|1|R1|A|1784
9NLH|1|R1|A|1785
9NLH|1|R1|A|1786
9NLH|1|R1|A|1787

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34