3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
9NLH|1|R1|A|1780, 9NLH|1|R1|U|1781, 9NLH|1|R1|U|1782, 9NLH|1|R1|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLH_043 not in the Motif Atlas
Homologous match to HL_4WF9_043
Geometric discrepancy: 0.0896
The information below is about HL_4WF9_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

9NLH|1|R1|U|1777
9NLH|1|R1|U|1778
9NLH|1|R1|U|1779
9NLH|1|R1|A|1780
9NLH|1|R1|U|1781
9NLH|1|R1|U|1782
9NLH|1|R1|A|1783
9NLH|1|R1|A|1784
9NLH|1|R1|A|1785
9NLH|1|R1|A|1786
9NLH|1|R1|A|1787

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2
Chain 34
50S ribosomal protein L34

Coloring options:


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