3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAUGGAAG
Length
10 nucleotides
Bulged bases
9NLH|1|R1|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLH_057 not in the Motif Atlas
Homologous match to HL_5J7L_192
Geometric discrepancy: 0.0842
The information below is about HL_5J7L_192
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53454.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

9NLH|1|R1|U|2404
9NLH|1|R1|G|2405
9NLH|1|R1|A|2406
9NLH|1|R1|A|2407
9NLH|1|R1|U|2408
9NLH|1|R1|G|2409
9NLH|1|R1|G|2410
9NLH|1|R1|A|2411
9NLH|1|R1|A|2412
9NLH|1|R1|G|2413

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L15

Coloring options:


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