HL_9NLH_077

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

9NLH|1|R3|C|330, 9NLH|1|R3|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLH_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1869

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NLH|1|R3|A|320
9NLH|1|R3|A|321
9NLH|1|R3|C|322
9NLH|1|R3|U|323
9NLH|1|R3|G|324
9NLH|1|R3|A|325
9NLH|1|R3|G|326
9NLH|1|R3|A|327
9NLH|1|R3|C|328
9NLH|1|R3|A|329
9NLH|1|R3|C|330
9NLH|1|R3|G|331
9NLH|1|R3|G|332
9NLH|1|R3|U|333

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20