HL_9NLH_090

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9NLH|1|R3|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLH_090 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1497

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NLH|1|R3|G|963
9NLH|1|R3|A|964
9NLH|1|R3|U|965
9NLH|1|R3|G|966
9NLH|1|R3|C|967
9NLH|1|R3|A|968
9NLH|1|R3|A|969
9NLH|1|R3|C|970
9NLH|1|R3|G|971
9NLH|1|R3|C|972

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10