HL_9NLH_100

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLH_100 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.1404

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9NLH|1|R3|G|1515
9NLH|1|R3|G|1516
9NLH|1|R3|G|1517
9NLH|1|R3|A|1518
9NLH|1|R3|A|1519
9NLH|1|R3|C|1520

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain R1

Large subunit ribosomal RNA; LSU rRNA