HL_9NLJ_008

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9NLJ|1|R1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_008 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1389

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

9NLJ|1|R1|C|305
9NLJ|1|R1|U|306
9NLJ|1|R1|G|307
9NLJ|1|R1|G|308
9NLJ|1|R1|A|309
9NLJ|1|R1|A|310
9NLJ|1|R1|A|311
9NLJ|1|R1|G|312

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24