HL_9NLJ_011

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9NLJ|1|R1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_011 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1949

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NLJ|1|R1|G|410
9NLJ|1|R1|G|411
9NLJ|1|R1|A|412
9NLJ|1|R1|C|413
9NLJ|1|R1|C|414
9NLJ|1|R1|A|415
9NLJ|1|R1|U|416
9NLJ|1|R1|C|417

Current chains

Chain R1

23S ribosomal RNA

Nearby chains