3D structure

PDB id
9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with Uup-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGCUAACGU
Length
10 nucleotides
Bulged bases
9NLJ|1|R1|U|958, 9NLJ|1|R1|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLJ_024 not in the Motif Atlas
Geometric match to HL_7QR8_003
Geometric discrepancy: 0.1822
The information below is about HL_7QR8_003
Detailed Annotation
GNRA with extra cWH
Broad Annotation
GNRA with extra cWH
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

9NLJ|1|R1|G|954
9NLJ|1|R1|U|955
9NLJ|1|R1|G|956
9NLJ|1|R1|C|957
9NLJ|1|R1|U|958
9NLJ|1|R1|A|959
9NLJ|1|R1|A|960
9NLJ|1|R1|C|961
9NLJ|1|R1|G|962
9NLJ|1|R1|U|963

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 16
50S ribosomal protein L16
Chain R2
5S ribosomal RNA; 5S rRNA

Coloring options:


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