HL_9NLJ_056

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_056 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1021

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NLJ|1|R1|C|2374
9NLJ|1|R1|G|2375
9NLJ|1|R1|A|2376
9NLJ|1|R1|A|2377
9NLJ|1|R1|A|2378
9NLJ|1|R1|G|2379

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18