HL_9NLJ_102

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

9NLJ|1|T|C|15, 9NLJ|1|T|C|16, 9NLJ|1|T|U|17, 9NLJ|1|T|G|18, 9NLJ|1|T|G|19, 9NLJ|1|T|H2U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_102 not in the Motif Atlas

Homologous match to HL_7YSE_001

Geometric discrepancy: 0.1167

The information below is about HL_7YSE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|T|C|12
9NLJ|1|T|A|13
9NLJ|1|T|G|14
9NLJ|1|T|C|15
9NLJ|1|T|C|16
9NLJ|1|T|U|17
9NLJ|1|T|G|18
9NLJ|1|T|G|19
9NLJ|1|T|H2U|20
9NLJ|1|T|A|21
9NLJ|1|T|G|22

Current chains

Chain T

tRNA

Nearby chains

Chain 5

50S ribosomal protein L5

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain U

Uup