HL_9NLN_004
3D structure
- PDB id
- 9NLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Coxakievirus B3 IRES Domain V in Complex with a Fab
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAACAC
- Length
- 7 nucleotides
- Bulged bases
- 9NLN|1|R|A|49, 9NLN|1|R|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLN_004 not in the Motif Atlas
- Geometric match to HL_6DB8_002
- Geometric discrepancy: 0.081
- The information below is about HL_6DB8_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64036.3
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 28
Unit IDs
9NLN|1|R|G|48
9NLN|1|R|A|49
9NLN|1|R|A|50
9NLN|1|R|A|51
9NLN|1|R|C|52
9NLN|1|R|A|53
9NLN|1|R|C|54
Current chains
- Chain R
- RNA (CVB3 IRES Domain V)
Nearby chains
- Chain A
- BL3-6 Fab Heavy Chain
- Chain C
- RNA (CVB3 IRES Domain V)
- Chain H
- BL3-6 Fab Heavy Chain
- Chain L
- BL3-6 Fab Light Chain
Coloring options: