9NLN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9NLN_001 | 1/C/48:54 | Fab BL3-6 binding hairpin with tSW HL_64036.3 | ||
| HL_9NLN_002 | 1/C/68:74 | No text annotation HL_34789.5 | ||
| HL_9NLN_003 | 1/C/75:80 | No text annotation HL_34789.5 | ||
| HL_9NLN_004 | 1/R/48:54 | No text annotation | geometric HL_6DB8_002 HL_64036.3 | |
| HL_9NLN_005 | 1/R/75:80 | No text annotation | geometric HL_9AXU_070 HL_34789.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9NLN_001 | 1/C/5:7, 1/C/106:110 | No text annotation IL_24466.1 | ||
| IL_9NLN_002 | 1/C/9:11, 1/C/102:104 | Isolated non-canonical cWW pair IL_71625.4 | ||
| IL_9NLN_003 | 1/C/12:15, 1/C/97:101 | No text annotation IL_60988.3 | ||
| IL_9NLN_004 | 1/C/15:16, 1/C/95:97 | Single bulged A IL_14190.3 | ||
| IL_9NLN_005 | 1/C/18:23, 1/C/91:93 | Isolated basepair with bulged bases IL_24466.1 | ||
| IL_9NLN_006 | 1/C/25:29, 1/C/87:89 | No text annotation IL_24466.1 | ||
| IL_9NLN_007 | 1/C/41:43, 1/C/59:62 | Isolated non-canonical cWW with bulges IL_68118.5 | ||
| IL_9NLN_008 | 1/R/5:7, 1/R/106:110 | No text annotation | ||
| IL_9NLN_009 | 1/R/9:11, 1/R/102:104 | No text annotation | geometric IL_8GLP_281 IL_71625.4 | |
| IL_9NLN_010 | 1/R/12:16, 1/R/95:101 | No text annotation | ||
| IL_9NLN_011 | 1/R/18:23, 1/R/91:93 | No text annotation | ||
| IL_9NLN_012 | 1/R/25:29, 1/R/87:89 | Major groove minor groove platform with extra cWW | geometric IL_4GXY_009 IL_24466.1 | |
| IL_9NLN_013 | 1/R/41:43, 1/R/59:62 | No text annotation | geometric IL_8GLP_187 IL_68118.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9NLN_001 | 1/R/35:36, 1/R/67:75, 1/R/80:81 | No text annotation | ||
| J4_9NLN_001 | 1/C/35:36, 1/C/67:68, 1/C/74:75, 1/C/80:81 | No text annotation J4_75575.2 |
Problematic loops
No problematic loops
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