HL_9NLQ_025

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

9NLQ|1|R1|U|958, 9NLQ|1|R1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_025 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.2133

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra cWH

Broad Annotation

GNRA with extra cWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NLQ|1|R1|G|954
9NLQ|1|R1|U|955
9NLQ|1|R1|G|956
9NLQ|1|R1|C|957
9NLQ|1|R1|U|958
9NLQ|1|R1|A|959
9NLQ|1|R1|A|960
9NLQ|1|R1|C|961
9NLQ|1|R1|G|962
9NLQ|1|R1|U|963

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain R2

5S ribosomal RNA; 5S rRNA