HL_9NLQ_035

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9NLQ|1|R1|G|1452, 9NLQ|1|R1|A|1453, 9NLQ|1|R1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1472

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NLQ|1|R1|C|1451
9NLQ|1|R1|G|1452
9NLQ|1|R1|A|1453
9NLQ|1|R1|C|1454
9NLQ|1|R1|G|1455
9NLQ|1|R1|G|1456
9NLQ|1|R1|U|1457
9NLQ|1|R1|U|1458
9NLQ|1|R1|G|1459

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17