HL_9NLQ_054

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9NLQ|1|R1|A|2268, 9NLQ|1|R1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0794

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9NLQ|1|R1|C|2264
9NLQ|1|R1|U|2265
9NLQ|1|R1|A|2266
9NLQ|1|R1|A|2267
9NLQ|1|R1|A|2268
9NLQ|1|R1|G|2269
9NLQ|1|R1|A|2270
9NLQ|1|R1|G|2271
9NLQ|1|R1|U|2272
9NLQ|1|R1|A|2273
9NLQ|1|R1|A|2274
9NLQ|1|R1|C|2275
9NLQ|1|R1|G|2276

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

Large ribosomal subunit protein bL27