HL_9NLQ_060

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1485

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9NLQ|1|R1|A|2471
9NLQ|1|R1|G|2472
9NLQ|1|R1|U|2473
9NLQ|1|R1|U|2474
9NLQ|1|R1|C|2475
9NLQ|1|R1|A|2476
9NLQ|1|R1|U|2477
9NLQ|1|R1|A|2478
9NLQ|1|R1|U|2479

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6