HL_9NLQ_061

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9NLQ|1|R1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_061 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0994

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9NLQ|1|R1|U|2528
9NLQ|1|R1|G|2529
9NLQ|1|R1|A|2530
9NLQ|1|R1|A|2531
9NLQ|1|R1|G|2532
9NLQ|1|R1|U|2533
9NLQ|1|R1|A|2534
9NLQ|1|R1|G|2535

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6