HL_9NLQ_064

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_064 not in the Motif Atlas

Homologous match to HL_5J7L_197

Geometric discrepancy: 0.0959

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NLQ|1|R1|C|2658
9NLQ|1|R1|G|2659
9NLQ|1|R1|A|2660
9NLQ|1|R1|G|2661
9NLQ|1|R1|A|2662
9NLQ|1|R1|G|2663

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6