HL_9NLQ_092

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9NLQ|1|R3|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_092 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1581

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R3|G|963
9NLQ|1|R3|A|964
9NLQ|1|R3|U|965
9NLQ|1|R3|G|966
9NLQ|1|R3|C|967
9NLQ|1|R3|A|968
9NLQ|1|R3|A|969
9NLQ|1|R3|C|970
9NLQ|1|R3|G|971
9NLQ|1|R3|C|972

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10