HL_9NLQ_099

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_099 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.1242

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9NLQ|1|R3|C|1265
9NLQ|1|R3|G|1266
9NLQ|1|R3|C|1267
9NLQ|1|R3|G|1268
9NLQ|1|R3|A|1269
9NLQ|1|R3|G|1270

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13

Chain ss

30S ribosomal protein S19