HL_9NLS_025

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

9NLS|1|R1|U|958, 9NLS|1|R1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_025 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.2036

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra tWH

Broad Annotation

GNRA with extra tWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|G|954
9NLS|1|R1|U|955
9NLS|1|R1|G|956
9NLS|1|R1|C|957
9NLS|1|R1|U|958
9NLS|1|R1|A|959
9NLS|1|R1|A|960
9NLS|1|R1|C|961
9NLS|1|R1|G|962
9NLS|1|R1|U|963

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain R2

5S ribosomal RNA; 5S rRNA