3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLS_030 not in the Motif Atlas
Homologous match to HL_5J7L_164
Geometric discrepancy: 0.1369
The information below is about HL_5J7L_164
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9NLS|1|R1|U|1222
9NLS|1|R1|G|1223
9NLS|1|R1|U|1224
9NLS|1|R1|G|1225
9NLS|1|R1|A|1226
9NLS|1|R1|G|1227

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 20
Large ribosomal subunit protein bL20
Chain 21
Large ribosomal subunit protein bL21

Coloring options:


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